Re: [MonetDB-users] MonetDB-11.3.1 on OpenBSD 4.9 i386 fails during make
It seems that in OpenBSD sys/sysctl.h requires sys/param.h (http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html). I've found this workaround, but I won't test it until tomorrow probably: http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html
I also don't know exactly how to apply the above workaround (or any other) in the MonetDB Makefile(s ?).
On Wed, May 4, 2011 at 6:27 PM, Michael Sioutis sioutis@di.uoa.gr wrote:
It seems that in OpenBSD sys/sysctl.h requires sys/param.h (http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html). I've found this workaround, but I won't test it until tomorrow probably: http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html
I also don't know exactly how to apply the above workaround (or any other) in the MonetDB Makefile(s ?).
On Wed, May 4, 2011 at 6:20 PM, Michael Sioutis papito.dit@gmail.com wrote:
I can't find any of HAVE_SYS_SYSCTL_H and KERN_PROC_PATHNAME defined in my config.log. Also, I have a warning about sysctl.h, which is in the configuration.log I posted earlier (my first post).
The important part is this: configure: WARNING: sys/sysctl.h: present but cannot be compiled configure: WARNING: sys/sysctl.h: check for missing prerequisite headers? configure: WARNING: sys/sysctl.h: see the Autoconf documentation configure: WARNING: sys/sysctl.h: section "Present But Cannot Be Compiled" configure: WARNING: sys/sysctl.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------- ## configure: WARNING: ## Report this to info@monetdb.org ## configure: WARNING: ## ------------------------------- ##
On Wed, May 4, 2011 at 6:06 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
Thanks for the summarisation!
On 04-05-2011 17:56:54 +0300, Michael Sioutis wrote:
To sum it up..
add #include <pthread.h> #include <pthread_np.h>
hmm, do you really need pthread_np.h? That seems like a non-standard header to me.
and... 2011-05-04 17:44:29 MSG mydb[19795]: !MALException:malInclude:could not open file: mal_init
This indicates some bigger problem...
2011-05-04 17:44:29 MSG mydb[19795]: #warning: unable to determine binary location, please use --set monet_mod_path=/path/to/... to allow finding modules
... and this causes it.
Can you tell me if HAVE_SYS_SYSCTL_H and KERN_PROC_PATHNAME are defined for you? common/utils/mutils.c is apparently unable to find the executable path on OpenBSD. Perhaps KERN_PROC_PATHNAME is not in sys/sysctl.h on OpenBSD?
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I'm not sure the warnings about sys/sysctl.h are indeed a problem. The real test is, is HAVE_SYS_SYSCTL_H defined in the produced monetdb_config.h file? If so, sys/sysctl.h will be used. Also, is HAVE_SYS_PARAM_H defined? If that is also defined, then they're both included, and in the correct order.
On 2011-05-04 17:29, Michael Sioutis wrote:
It seems that in OpenBSD sys/sysctl.h requires sys/param.h (http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html). I've found this workaround, but I won't test it until tomorrow probably: http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html
I also don't know exactly how to apply the above workaround (or any other) in the MonetDB Makefile(s ?).
On Wed, May 4, 2011 at 6:27 PM, Michael Sioutis sioutis@di.uoa.gr wrote:
It seems that in OpenBSD sys/sysctl.h requires sys/param.h (http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html). I've found this workaround, but I won't test it until tomorrow probably: http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html
I also don't know exactly how to apply the above workaround (or any other) in the MonetDB Makefile(s ?).
On Wed, May 4, 2011 at 6:20 PM, Michael Sioutis papito.dit@gmail.com wrote:
I can't find any of HAVE_SYS_SYSCTL_H and KERN_PROC_PATHNAME defined in my config.log. Also, I have a warning about sysctl.h, which is in the configuration.log I posted earlier (my first post).
The important part is this: configure: WARNING: sys/sysctl.h: present but cannot be compiled configure: WARNING: sys/sysctl.h: check for missing prerequisite headers? configure: WARNING: sys/sysctl.h: see the Autoconf documentation configure: WARNING: sys/sysctl.h: section "Present But Cannot Be Compiled" configure: WARNING: sys/sysctl.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------- ## configure: WARNING: ## Report this to info@monetdb.org ## configure: WARNING: ## ------------------------------- ##
On Wed, May 4, 2011 at 6:06 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
Thanks for the summarisation!
On 04-05-2011 17:56:54 +0300, Michael Sioutis wrote:
To sum it up..
add #include <pthread.h> #include <pthread_np.h>
hmm, do you really need pthread_np.h? That seems like a non-standard header to me.
and... 2011-05-04 17:44:29 MSG mydb[19795]: !MALException:malInclude:could not open file: mal_init
This indicates some bigger problem...
2011-05-04 17:44:29 MSG mydb[19795]: #warning: unable to determine binary location, please use --set monet_mod_path=/path/to/... to allow finding modules
... and this causes it.
Can you tell me if HAVE_SYS_SYSCTL_H and KERN_PROC_PATHNAME are defined for you? common/utils/mutils.c is apparently unable to find the executable path on OpenBSD. Perhaps KERN_PROC_PATHNAME is not in sys/sysctl.h on OpenBSD?
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
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429: /* Define to 1 if you have the <sys/param.h> header file. */ 430: #define HAVE_SYS_PARAM_H 1 . . . 441: /* Define to 1 if you have the <sys/sysctl.h> header file. */ 442: /* #undef HAVE_SYS_SYSCTL_H */
Also in the configuration.log: checking sys/sysctl.h usability... no
So they're not in the correct order or sth? Cause sys/param.h seems ok but sys/sysctl.h not.
On Wed, May 4, 2011 at 7:00 PM, Sjoerd Mullender sjoerd@acm.org wrote:
I'm not sure the warnings about sys/sysctl.h are indeed a problem. The real test is, is HAVE_SYS_SYSCTL_H defined in the produced monetdb_config.h file? If so, sys/sysctl.h will be used. Also, is HAVE_SYS_PARAM_H defined? If that is also defined, then they're both included, and in the correct order.
On 2011-05-04 17:29, Michael Sioutis wrote:
It seems that in OpenBSD sys/sysctl.h requires sys/param.h (http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html). I've found this workaround, but I won't test it until tomorrow probably: http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html
I also don't know exactly how to apply the above workaround (or any other) in the MonetDB Makefile(s ?).
On Wed, May 4, 2011 at 6:27 PM, Michael Sioutis sioutis@di.uoa.gr wrote:
It seems that in OpenBSD sys/sysctl.h requires sys/param.h (http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html). I've found this workaround, but I won't test it until tomorrow probably: http://lists.gnu.org/archive/html/bug-autoconf/2005-08/msg00015.html
I also don't know exactly how to apply the above workaround (or any other) in the MonetDB Makefile(s ?).
On Wed, May 4, 2011 at 6:20 PM, Michael Sioutis papito.dit@gmail.com wrote:
I can't find any of HAVE_SYS_SYSCTL_H and KERN_PROC_PATHNAME defined in my config.log. Also, I have a warning about sysctl.h, which is in the configuration.log I posted earlier (my first post).
The important part is this: configure: WARNING: sys/sysctl.h: present but cannot be compiled configure: WARNING: sys/sysctl.h: check for missing prerequisite headers? configure: WARNING: sys/sysctl.h: see the Autoconf documentation configure: WARNING: sys/sysctl.h: section "Present But Cannot Be Compiled" configure: WARNING: sys/sysctl.h: proceeding with the compiler's result configure: WARNING: ## ------------------------------- ## configure: WARNING: ## Report this to info@monetdb.org ## configure: WARNING: ## ------------------------------- ##
On Wed, May 4, 2011 at 6:06 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
Thanks for the summarisation!
On 04-05-2011 17:56:54 +0300, Michael Sioutis wrote:
To sum it up..
add #include <pthread.h> #include <pthread_np.h>
hmm, do you really need pthread_np.h? That seems like a non-standard header to me.
and... 2011-05-04 17:44:29 MSG mydb[19795]: !MALException:malInclude:could not open file: mal_init
This indicates some bigger problem...
2011-05-04 17:44:29 MSG mydb[19795]: #warning: unable to determine binary location, please use --set monet_mod_path=/path/to/... to allow finding modules
... and this causes it.
Can you tell me if HAVE_SYS_SYSCTL_H and KERN_PROC_PATHNAME are defined for you? common/utils/mutils.c is apparently unable to find the executable path on OpenBSD. Perhaps KERN_PROC_PATHNAME is not in sys/sysctl.h on OpenBSD?
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
-- Sjoerd Mullender
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
On 04-05-2011 19:08:23 +0300, Michael Sioutis wrote:
429: /* Define to 1 if you have the <sys/param.h> header file. */ 430: #define HAVE_SYS_PARAM_H 1 . . . 441: /* Define to 1 if you have the <sys/sysctl.h> header file. */ 442: /* #undef HAVE_SYS_SYSCTL_H */
Also in the configuration.log: checking sys/sysctl.h usability... no
So they're not in the correct order or sth? Cause sys/param.h seems ok but sys/sysctl.h not.
configure checks for this header in separation, hence sys/sysctl.h bombs out. We need to adopt this to a check that first includes sys/param.h (if found) and then tests sys/sysctl.h
Attached is a possible patch. It more-or-less follows the recommendation from the autoconf documentation.
On 2011-05-04 18:16, Fabian Groffen wrote:
On 04-05-2011 19:08:23 +0300, Michael Sioutis wrote:
429: /* Define to 1 if you have the <sys/param.h> header file. */ 430: #define HAVE_SYS_PARAM_H 1 . . . 441: /* Define to 1 if you have the <sys/sysctl.h> header file. */ 442: /* #undef HAVE_SYS_SYSCTL_H */
Also in the configuration.log: checking sys/sysctl.h usability... no
So they're not in the correct order or sth? Cause sys/param.h seems ok but sys/sysctl.h not.
configure checks for this header in separation, hence sys/sysctl.h bombs out. We need to adopt this to a check that first includes sys/param.h (if found) and then tests sys/sysctl.h
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
On 04-05-2011 18:31:12 +0200, Sjoerd Mullender wrote:
Attached is a possible patch. It more-or-less follows the recommendation from the autoconf documentation.
Hmm, I just checked in another patch copy 'n' pasted from the autoconf info page...
+AC_CHECK_HEADERS([sys/sysctl.h], [], [], +[$ac_includes_default +#ifdef HAVE_SYS_PARAM_H +# include <sys/param.h> +#endif +])
Difference is I don't have the $ac_includes_default bit.
I applied the patch, but in vain. Deleted entire build directory, re-configured, gmaked, gmake installed. Same behavior.
On Wed, May 4, 2011 at 7:31 PM, Sjoerd Mullender sjoerd@acm.org wrote:
Attached is a possible patch. It more-or-less follows the recommendation from the autoconf documentation.
On 2011-05-04 18:16, Fabian Groffen wrote:
On 04-05-2011 19:08:23 +0300, Michael Sioutis wrote:
429: /* Define to 1 if you have the <sys/param.h> header file. */ 430: #define HAVE_SYS_PARAM_H 1 . . . 441: /* Define to 1 if you have the <sys/sysctl.h> header file. */ 442: /* #undef HAVE_SYS_SYSCTL_H */
Also in the configuration.log: checking sys/sysctl.h usability... no
So they're not in the correct order or sth? Cause sys/param.h seems ok but sys/sysctl.h not.
configure checks for this header in separation, hence sys/sysctl.h bombs out. We need to adopt this to a check that first includes sys/param.h (if found) and then tests sys/sysctl.h
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
-- Sjoerd Mullender
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
On 04-05-2011 22:41:11 +0300, Michael Sioutis wrote:
I applied the patch, but in vain. Deleted entire build directory, re-configured, gmaked, gmake installed. Same behavior.
did configure still complain about sys/sysctl.h?
Yup it did. Nth different in monetdb_config.h either.
I did patch < syctl.patch and it added the following code in configure.ag: AC_CHECK_HEADERS([sys/sysctl.h], [], [], [$ac_includes_default #ifdef HAVE_SYS_PARAM_H # include <sys/param.h> #endif ])
On Wed, May 4, 2011 at 10:43 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 04-05-2011 22:41:11 +0300, Michael Sioutis wrote:
I applied the patch, but in vain. Deleted entire build directory, re-configured, gmaked, gmake installed. Same behavior.
did configure still complain about sys/sysctl.h?
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
On 04-05-2011 22:48:09 +0300, Michael Sioutis wrote:
Yup it did. Nth different in monetdb_config.h either.
I did patch < syctl.patch and it added the following code in configure.ag: AC_CHECK_HEADERS([sys/sysctl.h], [], [], [$ac_includes_default #ifdef HAVE_SYS_PARAM_H # include <sys/param.h> #endif ])
If you're not using Mercurial sources, please try this tar: http://monetdb.cwi.nl/testing/projects/monetdb/testweb/web/40107:fcae3cfc1f5...
It should include all fixes made for OpenBSD today.
In monetdb_config.h /* Define to 1 if you have the <sys/sysctl.h> header file. */ #define HAVE_SYS_SYSCTL_H 1
The configuration seems promising. Also I noticed you included the patch without the $ac_includes_default bit.
I'll cross fingers till gmake is done (it takes a while because it's an old machine) and report status later :)
On Wed, May 4, 2011 at 11:09 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 04-05-2011 22:48:09 +0300, Michael Sioutis wrote:
Yup it did. Nth different in monetdb_config.h either.
I did patch < syctl.patch and it added the following code in configure.ag: AC_CHECK_HEADERS([sys/sysctl.h], [], [], [$ac_includes_default #ifdef HAVE_SYS_PARAM_H # include <sys/param.h> #endif ])
If you're not using Mercurial sources, please try this tar: http://monetdb.cwi.nl/testing/projects/monetdb/testweb/web/40107:fcae3cfc1f5...
It should include all fixes made for OpenBSD today.
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
I shouldn't think it was gonna be that easy..
==================================================================== In file included from /usr//include/sys/sysctl.h:46, from gdk_system.h:60, from ../../gdk/gdk_system.mx:233: /usr//include/sys/ucred.h:46: error: 'NGROUPS' undeclared here (not in a function) In file included from /usr//include/sys/sysctl.h:47, from gdk_system.h:60, from ../../gdk/gdk_system.mx:233: /usr//include/sys/proc.h:64: error: 'MAXLOGNAME' undeclared here (not in a function) /usr//include/sys/proc.h:287: error: 'MAXCOMLEN' undeclared here (not in a function) gmake[3]: *** [libbat_la-gdk_system.lo] Error 1 gmake[3]: Leaving directory `/home/pico/MonetDB-11.3.2/BUILD/gdk' gmake[2]: *** [all] Error 2 gmake[2]: Leaving directory `/home/pico/MonetDB-11.3.2/BUILD/gdk' gmake[1]: *** [all-recursive] Error 1 ====================================================================
NGROUPS is defined as a preprocessor macro in: sys/param.h, line 73 MAXLOGNAME is defined as a preprocessor macro in: sys/param.h, line 70 MAXCOMLEN is defined as a preprocessor macro in: sys/param.h, line 68
So, I changed in MonetDB-11.3.2/BUILD/gdk/gdk_system.h (actually I could have changed it in the .mx file): #ifdef HAVE_SYS_SYSCTL_H # include <sys/sysctl.h> #endif to: #ifdef HAVE_SYS_SYSCTL_H # include <sys/param.h> # include <sys/sysctl.h> #endif
After a long time of compilation with gmake, I am now stuck with this error:
==================================================================== /home/pico/MonetDB-11.3.2/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status gmake[5]: *** [mserver5] Error 1 gmake[5]: Leaving directory `/home/pico/MonetDB-11.3.2/BUILD/tools/mserver' gmake[4]: *** [all] Error 2 gmake[4]: Leaving directory `/home/pico/MonetDB-11.3.2/BUILD/tools/mserver' gmake[3]: *** [all-recursive] Error 1 gmake[3]: Leaving directory `/home/pico/MonetDB-11.3.2/BUILD/tools' gmake[2]: *** [all] Error 2 gmake[2]: Leaving directory `/home/pico/MonetDB-11.3.2/BUILD/tools' gmake[1]: *** [all-recursive] Error 1 gmake[1]: Leaving directory `/home/pico/MonetDB-11.3.2/BUILD' gmake: *** [all] Error 2 ====================================================================
I believe some library should be linked.
On Wed, May 4, 2011 at 11:27 PM, Michael Sioutis papito.dit@gmail.com wrote:
In monetdb_config.h /* Define to 1 if you have the <sys/sysctl.h> header file. */ #define HAVE_SYS_SYSCTL_H 1
The configuration seems promising. Also I noticed you included the patch without the $ac_includes_default bit.
I'll cross fingers till gmake is done (it takes a while because it's an old machine) and report status later :)
On Wed, May 4, 2011 at 11:09 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 04-05-2011 22:48:09 +0300, Michael Sioutis wrote:
Yup it did. Nth different in monetdb_config.h either.
I did patch < syctl.patch and it added the following code in configure.ag: AC_CHECK_HEADERS([sys/sysctl.h], [], [], [$ac_includes_default #ifdef HAVE_SYS_PARAM_H # include <sys/param.h> #endif ])
If you're not using Mercurial sources, please try this tar: http://monetdb.cwi.nl/testing/projects/monetdb/testweb/web/40107:fcae3cfc1f5...
It should include all fixes made for OpenBSD today.
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
On 05-05-2011 01:07:29 +0300, Michael Sioutis wrote:
NGROUPS is defined as a preprocessor macro in: sys/param.h, line 73 MAXLOGNAME is defined as a preprocessor macro in: sys/param.h, line 70 MAXCOMLEN is defined as a preprocessor macro in: sys/param.h, line 68
So, I changed in MonetDB-11.3.2/BUILD/gdk/gdk_system.h (actually I could have changed it in the .mx file): #ifdef HAVE_SYS_SYSCTL_H # include <sys/sysctl.h> #endif to: #ifdef HAVE_SYS_SYSCTL_H # include <sys/param.h> # include <sys/sysctl.h> #endif
I fixed this in the code for all places where sys/sysctl.h is included now. Thanks.
/home/pico/MonetDB-11.3.2/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname'
I believe some library should be linked.
Indeed. Does the manpage of sysctlbyname list which library needs to be linked to?
http://www.daemon-systems.org/man/sysctlbyname.3.html So -lc should be used in the flags.
If -lpthread is used also, the order should be ... -lpthread -lc ...
On Thu, May 5, 2011 at 9:27 AM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 01:07:29 +0300, Michael Sioutis wrote:
NGROUPS is defined as a preprocessor macro in: sys/param.h, line 73 MAXLOGNAME is defined as a preprocessor macro in: sys/param.h, line 70 MAXCOMLEN is defined as a preprocessor macro in: sys/param.h, line 68
So, I changed in MonetDB-11.3.2/BUILD/gdk/gdk_system.h (actually I could have changed it in the .mx file): #ifdef HAVE_SYS_SYSCTL_H # include <sys/sysctl.h> #endif to: #ifdef HAVE_SYS_SYSCTL_H # include <sys/param.h> # include <sys/sysctl.h> #endif
I fixed this in the code for all places where sys/sysctl.h is included now. Thanks.
/home/pico/MonetDB-11.3.2/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname'
I believe some library should be linked.
Indeed. Does the manpage of sysctlbyname list which library needs to be linked to?
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
On 05-05-2011 10:04:20 +0300, Michael Sioutis wrote:
http://www.daemon-systems.org/man/sysctlbyname.3.html So -lc should be used in the flags.
Ok, thanks, I'll take a look.
If -lpthread is used also, the order should be ... -lpthread -lc ...
We use -pthread when possible, because gcc in general knows best what order and so on.
On 05-05-2011 09:18:52 +0200, Fabian Groffen wrote:
On 05-05-2011 10:04:20 +0300, Michael Sioutis wrote:
http://www.daemon-systems.org/man/sysctlbyname.3.html So -lc should be used in the flags.
Ok, thanks, I'll take a look.
This commit should do it: http://dev.monetdb.org/hg/MonetDB/rev/1331a211ca03
You'll have to (re)bootstrap if you apply this as patch
I am using the tarball 11.3.2 and applied the changes manually, but I have messed up since the same error occurs and I don't see a "-lc" flag here: libtool: link: gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB-11.3.2/BUILD/gdk/.libs -L/home/pico/MonetDB-11.3.2/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB-11.3.2/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -pthread -Wl,-rpath,/home/pico/MonetDB/lib -Wl,-rpath,/usr/local/lib
I also noticed some Makefiles.aG didn't exist, they were Makefile.aM, so I applied the changes there.
Since the tarball isn't very handy, should I go for the default branch? Correct me if I'm wrong, this should be: hg clone -r default http://dev.monetdb.org/hg/MonetDB
On Thu, May 5, 2011 at 10:42 AM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 09:18:52 +0200, Fabian Groffen wrote:
On 05-05-2011 10:04:20 +0300, Michael Sioutis wrote:
http://www.daemon-systems.org/man/sysctlbyname.3.html So -lc should be used in the flags.
Ok, thanks, I'll take a look.
This commit should do it: http://dev.monetdb.org/hg/MonetDB/rev/1331a211ca03
You'll have to (re)bootstrap if you apply this as patch
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On Thu, May 05, 2011 at 11:43:17AM +0300, Michael Sioutis wrote:
I am using the tarball 11.3.2 and applied the changes manually, but I have messed up since the same error occurs and I don't see a "-lc" flag here: libtool: link: gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB-11.3.2/BUILD/gdk/.libs -L/home/pico/MonetDB-11.3.2/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB-11.3.2/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -pthread -Wl,-rpath,/home/pico/MonetDB/lib -Wl,-rpath,/usr/local/lib
I also noticed some Makefiles.aG didn't exist, they were Makefile.aM, so I applied the changes there.
Since the tarball is already bootstrapped, Makefile.aM have been generated from Makefile.aG; hence, the latter are not required and hence not supposed to be in the tarball.
Since the tarball isn't very handy, should I go for the default branch?
Better go for the latest release branch "Apr2011", Fabian applied his bug fixes there.
Correct me if I'm wrong, this should be: hg clone -r default http://dev.monetdb.org/hg/MonetDB
I do:
hg clone -u Apr2011 http://dev.monetdb.org/hg/MonetDB/
Stefan
I had to export AUTOCONF_VERSION and AUTOMAKE_VERSION variables, and copy some .../libtool.m4 to aclocal.m4, to get bootstrap to work, but it worked and configuration was smooth.
Now.. In file included from ../../../clients/mapilib/mapi.c:803: /usr//include/malloc.h:4:2: error: #warning "<malloc.h> is obsolete, use <stdlib.h>" This is a first since the tarball only gave me warnings about this.
I have to pass this option to the compiler: "-DNGX_HAVE_MALLOC_H=0" But I can't find anything relevant with configure --help
On Thu, May 5, 2011 at 12:07 PM, Stefan.Manegold@cwi.nl wrote:
On Thu, May 05, 2011 at 11:43:17AM +0300, Michael Sioutis wrote:
I am using the tarball 11.3.2 and applied the changes manually, but I have messed up since the same error occurs and I don't see a "-lc" flag here: libtool: link: gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB-11.3.2/BUILD/gdk/.libs -L/home/pico/MonetDB-11.3.2/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB-11.3.2/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -pthread -Wl,-rpath,/home/pico/MonetDB/lib -Wl,-rpath,/usr/local/lib
I also noticed some Makefiles.aG didn't exist, they were Makefile.aM, so I applied the changes there.
Since the tarball is already bootstrapped, Makefile.aM have been generated from Makefile.aG; hence, the latter are not required and hence not supposed to be in the tarball.
Since the tarball isn't very handy, should I go for the default branch?
Better go for the latest release branch "Apr2011", Fabian applied his bug fixes there.
Correct me if I'm wrong, this should be: hg clone -r default http://dev.monetdb.org/hg/MonetDB
I do:
hg clone -u Apr2011 http://dev.monetdb.org/hg/MonetDB/
Stefan
-- | Stefan.Manegold @ CWI.nl | DB Architectures (INS1) | | http://CWI.nl/~manegold/ | Science Park 123 (L321) | | Tel.: +31 (0)20 592-4212 | 1098 XG Amsterdam (NL) |
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On 05-05-2011 13:11:10 +0300, Michael Sioutis wrote:
I had to export AUTOCONF_VERSION and AUTOMAKE_VERSION variables, and copy some .../libtool.m4 to aclocal.m4, to get bootstrap to work, but it worked and configuration was smooth.
Now.. In file included from ../../../clients/mapilib/mapi.c:803: /usr//include/malloc.h:4:2: error: #warning "<malloc.h> is obsolete, use <stdlib.h>" This is a first since the tarball only gave me warnings about this.
I have to pass this option to the compiler: "-DNGX_HAVE_MALLOC_H=0" But I can't find anything relevant with configure --help
configure with --disable-strict --disable-optimize --disable-debug
mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status
On Thu, May 5, 2011 at 1:24 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 13:11:10 +0300, Michael Sioutis wrote:
I had to export AUTOCONF_VERSION and AUTOMAKE_VERSION variables, and copy some .../libtool.m4 to aclocal.m4, to get bootstrap to work, but it worked and configuration was smooth.
Now.. In file included from ../../../clients/mapilib/mapi.c:803: /usr//include/malloc.h:4:2: error: #warning "<malloc.h> is obsolete, use <stdlib.h>" This is a first since the tarball only gave me warnings about this.
I have to pass this option to the compiler: "-DNGX_HAVE_MALLOC_H=0" But I can't find anything relevant with configure --help
configure with --disable-strict --disable-optimize --disable-debug
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On 05-05-2011 14:13:01 +0300, Michael Sioutis wrote:
mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status
and the link command invocation does not include -lc I presume?
Ah yes, sorry about that, forgot to include it:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib
It should be ... -lpthread <HERE> -lm ...
On Thu, May 5, 2011 at 2:28 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 14:13:01 +0300, Michael Sioutis wrote:
mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status
and the link command invocation does not include -lc I presume?
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On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote:
Ah yes, sorry about that, forgot to include it:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib
It should be ... -lpthread <HERE> -lm ...
Ok, seems I forgot all indirect consumers :/
On 05-05-2011 13:50:29 +0200, Fabian Groffen wrote:
On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote:
Ah yes, sorry about that, forgot to include it:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib
It should be ... -lpthread <HERE> -lm ...
Ok, seems I forgot all indirect consumers :/
Ok, I hope this commit will do: http://dev.monetdb.org/hg/MonetDB/rev/58ca3da52d10
Nop:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status gmake[5]: *** [mserver5] Error 1
I /de-bootstraped, reconfigured and later even placed C_LIBS="-lc" in configure.ag, reconfigured, gmaked, ...same error. I thought that would do it.
On Thu, May 5, 2011 at 3:08 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 13:50:29 +0200, Fabian Groffen wrote:
On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote:
Ah yes, sorry about that, forgot to include it:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib
It should be ... -lpthread <HERE> -lm ...
Ok, seems I forgot all indirect consumers :/
Ok, I hope this commit will do: http://dev.monetdb.org/hg/MonetDB/rev/58ca3da52d10
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On Thu, May 05, 2011 at 05:00:34PM +0300, Michael Sioutis wrote:
Nop:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status gmake[5]: *** [mserver5] Error 1
I /de-bootstraped, reconfigured and later even placed C_LIBS="-lc" in configure.ag, reconfigured, gmaked, ...same error. I thought that would do it.
I assume you ran ./bootstrap after ./de-bootstrap and before configure, right? (well, ./de-bootstrap removed configure; only ./bootstrap creates it, again ...)
Did you also re-run ./bootstrap after modifying configure.ag? ./bootstrap always needs to be run after changes to any *.ag file(s), otherwise those changes are not effective ...
Stefan
On Thu, May 5, 2011 at 3:08 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 13:50:29 +0200, Fabian Groffen wrote:
On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote:
Ah yes, sorry about that, forgot to include it:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib
It should be ... -lpthread <HERE> -lm ...
Ok, seems I forgot all indirect consumers :/
Ok, I hope this commit will do: http://dev.monetdb.org/hg/MonetDB/rev/58ca3da52d10
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I remember I did bootstrap again after modifying congifure.ag, but I'm in the process of cleaning up everything and trying again.
On Thu, May 5, 2011 at 5:08 PM, Stefan.Manegold@cwi.nl wrote:
On Thu, May 05, 2011 at 05:00:34PM +0300, Michael Sioutis wrote:
Nop:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status gmake[5]: *** [mserver5] Error 1
I /de-bootstraped, reconfigured and later even placed C_LIBS="-lc" in configure.ag, reconfigured, gmaked, ...same error. I thought that would do it.
I assume you ran ./bootstrap after ./de-bootstrap and before configure, right? (well, ./de-bootstrap removed configure; only ./bootstrap creates it, again ...)
Did you also re-run ./bootstrap after modifying configure.ag? ./bootstrap always needs to be run after changes to any *.ag file(s), otherwise those changes are not effective ...
Stefan
On Thu, May 5, 2011 at 3:08 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 13:50:29 +0200, Fabian Groffen wrote:
On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote:
Ah yes, sorry about that, forgot to include it:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib
It should be ... -lpthread <HERE> -lm ...
Ok, seems I forgot all indirect consumers :/
Ok, I hope this commit will do: http://dev.monetdb.org/hg/MonetDB/rev/58ca3da52d10
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
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-- | Stefan.Manegold @ CWI.nl | DB Architectures (INS1) | | http://CWI.nl/~manegold/ | Science Park 123 (L321) | | Tel.: +31 (0)20 592-4212 | 1098 XG Amsterdam (NL) |
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
This is with: C_LIBS="-lc"
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status
Same error and no sign of -lc
On Thu, May 5, 2011 at 5:14 PM, Michael Sioutis papito.dit@gmail.com wrote:
I remember I did bootstrap again after modifying congifure.ag, but I'm in the process of cleaning up everything and trying again.
On Thu, May 5, 2011 at 5:08 PM, Stefan.Manegold@cwi.nl wrote:
On Thu, May 05, 2011 at 05:00:34PM +0300, Michael Sioutis wrote:
Nop:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status gmake[5]: *** [mserver5] Error 1
I /de-bootstraped, reconfigured and later even placed C_LIBS="-lc" in configure.ag, reconfigured, gmaked, ...same error. I thought that would do it.
I assume you ran ./bootstrap after ./de-bootstrap and before configure, right? (well, ./de-bootstrap removed configure; only ./bootstrap creates it, again ...)
Did you also re-run ./bootstrap after modifying configure.ag? ./bootstrap always needs to be run after changes to any *.ag file(s), otherwise those changes are not effective ...
Stefan
On Thu, May 5, 2011 at 3:08 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 13:50:29 +0200, Fabian Groffen wrote:
On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote:
Ah yes, sorry about that, forgot to include it:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib
It should be ... -lpthread <HERE> -lm ...
Ok, seems I forgot all indirect consumers :/
Ok, I hope this commit will do: http://dev.monetdb.org/hg/MonetDB/rev/58ca3da52d10
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Ok, sysctlbyname() is NOT Implemented in OpenBSD for sure. The man page I was reading and posted here was about NetBSD.. There is a bug report about this in MonetDB mail archive, and a patch which somehow got lost in the way to current revision (?). http://www.mail-archive.com/monetdb-bugs@lists.sourceforge.net/msg06075.html
So you don't need to revert any changes, apparently -lc is good for FreeBSD and NetBSD (I double checked it), but not for OpenBSD. Just maybe change the title "build: allow to resolve sysctl funcs on FreeBSD/NetBSD"
On Thu, May 5, 2011 at 6:01 PM, Michael Sioutis papito.dit@gmail.com wrote:
This is with: C_LIBS="-lc"
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status
Same error and no sign of -lc
On Thu, May 5, 2011 at 5:14 PM, Michael Sioutis papito.dit@gmail.com wrote:
I remember I did bootstrap again after modifying congifure.ag, but I'm in the process of cleaning up everything and trying again.
On Thu, May 5, 2011 at 5:08 PM, Stefan.Manegold@cwi.nl wrote:
On Thu, May 05, 2011 at 05:00:34PM +0300, Michael Sioutis wrote:
Nop:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status gmake[5]: *** [mserver5] Error 1
I /de-bootstraped, reconfigured and later even placed C_LIBS="-lc" in configure.ag, reconfigured, gmaked, ...same error. I thought that would do it.
I assume you ran ./bootstrap after ./de-bootstrap and before configure, right? (well, ./de-bootstrap removed configure; only ./bootstrap creates it, again ...)
Did you also re-run ./bootstrap after modifying configure.ag? ./bootstrap always needs to be run after changes to any *.ag file(s), otherwise those changes are not effective ...
Stefan
On Thu, May 5, 2011 at 3:08 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 13:50:29 +0200, Fabian Groffen wrote:
On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote: > Ah yes, sorry about that, forgot to include it: > > gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o > .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E > -L/home/pico/MonetDB/BUILD/gdk/.libs > -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs > -L/home/pico/MonetDB/BUILD/common/stream/.libs > -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi > -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat > -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl > -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib > -Wl,-rpath,/usr/local/lib > > It should be ... -lpthread <HERE> -lm ...
Ok, seems I forgot all indirect consumers :/
Ok, I hope this commit will do: http://dev.monetdb.org/hg/MonetDB/rev/58ca3da52d10
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
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-- | Stefan.Manegold @ CWI.nl | DB Architectures (INS1) | | http://CWI.nl/~manegold/ | Science Park 123 (L321) | | Tel.: +31 (0)20 592-4212 | 1098 XG Amsterdam (NL) |
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
Michael.
thanks for digging this up!
The "old" patch [1] is actually still in the code, but it does only avoid the use of sysctlbyname() to find out he number of processores/cores in MT_check_nr_cores() (gdk/gdk_system.mx) --- provided (your) OpenBSD indeed defined __OpenBSD__, and not any of __FreeBSD__, __NetBSD__, __MACH__, ...
However, there are two more calls to sysctlbyname() in MT_init() (gdk/gdk_utils.mx) to find out the pagsize, and one of these might trigger the linking problem in your case, i.e., the respective checks there are necessary but not sufficient ...
I know to little about the matter to dig further myself, but maybe the above helps Fabian to go on ...
Stefan
[1] http://dev.monetdb.org/hg/MonetDB/rev/df23faf73516
On Thu, May 05, 2011 at 08:44:37PM +0300, Michael Sioutis wrote:
Ok, sysctlbyname() is NOT Implemented in OpenBSD for sure. The man page I was reading and posted here was about NetBSD.. There is a bug report about this in MonetDB mail archive, and a patch which somehow got lost in the way to current revision (?). http://www.mail-archive.com/monetdb-bugs@lists.sourceforge.net/msg06075.html
So you don't need to revert any changes, apparently -lc is good for FreeBSD and NetBSD (I double checked it), but not for OpenBSD. Just maybe change the title "build: allow to resolve sysctl funcs on FreeBSD/NetBSD"
On Thu, May 5, 2011 at 6:01 PM, Michael Sioutis papito.dit@gmail.com wrote:
This is with: C_LIBS="-lc"
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status
Same error and no sign of -lc
On Thu, May 5, 2011 at 5:14 PM, Michael Sioutis papito.dit@gmail.com wrote:
I remember I did bootstrap again after modifying congifure.ag, but I'm in the process of cleaning up everything and trying again.
On Thu, May 5, 2011 at 5:08 PM, Stefan.Manegold@cwi.nl wrote:
On Thu, May 05, 2011 at 05:00:34PM +0300, Michael Sioutis wrote:
Nop:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status gmake[5]: *** [mserver5] Error 1
I /de-bootstraped, reconfigured and later even placed C_LIBS="-lc" in configure.ag, reconfigured, gmaked, ...same error. I thought that would do it.
I assume you ran ./bootstrap after ./de-bootstrap and before configure, right? (well, ./de-bootstrap removed configure; only ./bootstrap creates it, again ...)
Did you also re-run ./bootstrap after modifying configure.ag? ./bootstrap always needs to be run after changes to any *.ag file(s), otherwise those changes are not effective ...
Stefan
On Thu, May 5, 2011 at 3:08 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 13:50:29 +0200, Fabian Groffen wrote: > On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote: > > Ah yes, sorry about that, forgot to include it: > > > > gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o > > .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E > > -L/home/pico/MonetDB/BUILD/gdk/.libs > > -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs > > -L/home/pico/MonetDB/BUILD/common/stream/.libs > > -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi > > -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat > > -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl > > -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib > > -Wl,-rpath,/usr/local/lib > > > > It should be ... -lpthread <HERE> -lm ... > > Ok, seems I forgot all indirect consumers :/
Ok, I hope this commit will do: http://dev.monetdb.org/hg/MonetDB/rev/58ca3da52d10
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
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-- | Stefan.Manegold @ CWI.nl | DB Architectures (INS1) | | http://CWI.nl/~manegold/ | Science Park 123 (L321) | | Tel.: +31 (0)20 592-4212 | 1098 XG Amsterdam (NL) |
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
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I am __OpenBSD__ for sure:
/* test.c */ #if defined(__OpenBSD__) #include <malloc.h> #endif int main(void){return 0;}
pico@hive:~$ gcc -Wall -W -ansi -pedantic -o test test.c In file included from test.c:3: /usr//include/malloc.h:4:2: warning: #warning "<malloc.h> is obsolete, use <stdlib.h>"
At least it makes sense to me now why this is happening :)
On Thu, May 5, 2011 at 9:09 PM, Stefan.Manegold@cwi.nl wrote:
Michael.
thanks for digging this up!
The "old" patch [1] is actually still in the code, but it does only avoid the use of sysctlbyname() to find out he number of processores/cores in MT_check_nr_cores() (gdk/gdk_system.mx) --- provided (your) OpenBSD indeed defined __OpenBSD__, and not any of __FreeBSD__, __NetBSD__, __MACH__, ...
However, there are two more calls to sysctlbyname() in MT_init() (gdk/gdk_utils.mx) to find out the pagsize, and one of these might trigger the linking problem in your case, i.e., the respective checks there are necessary but not sufficient ...
I know to little about the matter to dig further myself, but maybe the above helps Fabian to go on ...
Stefan
[1] http://dev.monetdb.org/hg/MonetDB/rev/df23faf73516
On Thu, May 05, 2011 at 08:44:37PM +0300, Michael Sioutis wrote:
Ok, sysctlbyname() is NOT Implemented in OpenBSD for sure. The man page I was reading and posted here was about NetBSD.. There is a bug report about this in MonetDB mail archive, and a patch which somehow got lost in the way to current revision (?). http://www.mail-archive.com/monetdb-bugs@lists.sourceforge.net/msg06075.html
So you don't need to revert any changes, apparently -lc is good for FreeBSD and NetBSD (I double checked it), but not for OpenBSD. Just maybe change the title "build: allow to resolve sysctl funcs on FreeBSD/NetBSD"
On Thu, May 5, 2011 at 6:01 PM, Michael Sioutis papito.dit@gmail.com wrote:
This is with: C_LIBS="-lc"
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status
Same error and no sign of -lc
On Thu, May 5, 2011 at 5:14 PM, Michael Sioutis papito.dit@gmail.com wrote:
I remember I did bootstrap again after modifying congifure.ag, but I'm in the process of cleaning up everything and trying again.
On Thu, May 5, 2011 at 5:08 PM, Stefan.Manegold@cwi.nl wrote:
On Thu, May 05, 2011 at 05:00:34PM +0300, Michael Sioutis wrote:
Nop:
gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E -L/home/pico/MonetDB/BUILD/gdk/.libs -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs -L/home/pico/MonetDB/BUILD/common/stream/.libs -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib -Wl,-rpath,/usr/local/lib /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: warning: vsprintf() is often misused, please use vsnprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcpy() is almost always misused, please use strlcpy() mserver5.o(.text+0x5b3): In function `absolute_path': ../../../tools/mserver/mserver5.c:160: warning: sprintf() is often misused, please use snprintf() ../../monetdb5/tools/.libs/libmonetdb5.so.7.0: warning: strcat() is almost always misused, please use strlcat() /home/pico/MonetDB/BUILD/gdk/.libs/libbat.so.3.0: undefined reference to `sysctlbyname' collect2: ld returned 1 exit status gmake[5]: *** [mserver5] Error 1
I /de-bootstraped, reconfigured and later even placed C_LIBS="-lc" in configure.ag, reconfigured, gmaked, ...same error. I thought that would do it.
I assume you ran ./bootstrap after ./de-bootstrap and before configure, right? (well, ./de-bootstrap removed configure; only ./bootstrap creates it, again ...)
Did you also re-run ./bootstrap after modifying configure.ag? ./bootstrap always needs to be run after changes to any *.ag file(s), otherwise those changes are not effective ...
Stefan
On Thu, May 5, 2011 at 3:08 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote: > On 05-05-2011 13:50:29 +0200, Fabian Groffen wrote: >> On 05-05-2011 14:33:30 +0300, Michael Sioutis wrote: >> > Ah yes, sorry about that, forgot to include it: >> > >> > gcc -g -O2 -Wno-declaration-after-statement -D_REENTRANT -o >> > .libs/mserver5 mserver5.o monet_version.o -pthread -pthread -Wl,-E >> > -L/home/pico/MonetDB/BUILD/gdk/.libs >> > -L/home/pico/MonetDB/BUILD/clients/mapilib/.libs >> > -L/home/pico/MonetDB/BUILD/common/stream/.libs >> > -L../../monetdb5/tools/.libs -lmonetdb5 -L/usr/local/lib -lmapi >> > -lreadline -ltermcap -lxml2 -lpthread -lm -L../../gdk/.libs -lbat >> > -lstream -pthread -lcurl -lidn -lz -lintl -liconv -lpcre -lssl >> > -lcrypto -Wl,-rpath,/home/pico/MonetDB-Apr2011/lib >> > -Wl,-rpath,/usr/local/lib >> > >> > It should be ... -lpthread <HERE> -lm ... >> >> Ok, seems I forgot all indirect consumers :/ > > Ok, I hope this commit will do: > http://dev.monetdb.org/hg/MonetDB/rev/58ca3da52d10 > > ------------------------------------------------------------------------------ > WhatsUp Gold - Download Free Network Management Software > The most intuitive, comprehensive, and cost-effective network > management toolset available today. Delivers lowest initial > acquisition cost and overall TCO of any competing solution. > http://p.sf.net/sfu/whatsupgold-sd > _______________________________________________ > MonetDB-users mailing list > MonetDB-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/monetdb-users >
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On 05-05-2011 20:44:37 +0300, Michael Sioutis wrote:
Ok, sysctlbyname() is NOT Implemented in OpenBSD for sure. The man page I was reading and posted here was about NetBSD.. There is a bug report about this in MonetDB mail archive, and a patch which somehow got lost in the way to current revision (?). http://www.mail-archive.com/monetdb-bugs@lists.sourceforge.net/msg06075.html
So you don't need to revert any changes, apparently -lc is good for FreeBSD and NetBSD (I double checked it), but not
freebsd doesn't need it, or we would've found that during the nightly builds.
for OpenBSD. Just maybe change the title "build: allow to resolve sysctl funcs on FreeBSD/NetBSD"
I'll do.
On 05-05-2011 20:44:37 +0300, Michael Sioutis wrote:
Ok, sysctlbyname() is NOT Implemented in OpenBSD for sure. The man page I was reading and posted here was about NetBSD..
How about this patch? http://dev.monetdb.org/hg/MonetDB/rev/eaf69ec3244e
Hello Fabian,
bootstrap OK .configure --prefix=/home/pico/MonetDB-Apr2011/ --disable-strict --disable-optimize --disable-debug OK gmake -j1 OK gmake -j1 install OK pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd unable to open '${prefix}/var/log/monetdb/merovingian.log': No such file or directory
I am vrey ill today, and I don't have clarity, but I think ("") should be used instead of single ones.
On Fri, May 6, 2011 at 1:50 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 05-05-2011 20:44:37 +0300, Michael Sioutis wrote:
Ok, sysctlbyname() is NOT Implemented in OpenBSD for sure. The man page I was reading and posted here was about NetBSD..
How about this patch? http://dev.monetdb.org/hg/MonetDB/rev/eaf69ec3244e
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On 06-05-2011 20:09:12 +0300, Michael Sioutis wrote:
Hello Fabian,
bootstrap OK .configure --prefix=/home/pico/MonetDB-Apr2011/ --disable-strict --disable-optimize --disable-debug OK gmake -j1 OK gmake -j1 install OK pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd unable to open '${prefix}/var/log/monetdb/merovingian.log': No such file or directory
I am vrey ill today, and I don't have clarity, but I think ("") should be used instead of single ones.
Hmmm, not really, you have a bug that I fixed already a couple of days ago. Odd. Apparently it still isn't fixed completely yet. The easiest way to fix this is by just doing a monetdbd set logfile=/home/pico/MonetDB-Apr2011/var/log/monetdb/merovingian.log and similar for pidfile
pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd set pidfile=/home/pico/MonetDB-Apr2011/var/log/monetdb/merovingian.log sending SIGHUP to monetdbd[2011] failed: No such process
On Fri, May 6, 2011 at 8:14 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 06-05-2011 20:09:12 +0300, Michael Sioutis wrote:
Hello Fabian,
bootstrap OK .configure --prefix=/home/pico/MonetDB-Apr2011/ --disable-strict --disable-optimize --disable-debug OK gmake -j1 OK gmake -j1 install OK pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd unable to open '${prefix}/var/log/monetdb/merovingian.log': No such file or directory
I am vrey ill today, and I don't have clarity, but I think ("") should be used instead of single ones.
Hmmm, not really, you have a bug that I fixed already a couple of days ago. Odd. Apparently it still isn't fixed completely yet. The easiest way to fix this is by just doing a monetdbd set logfile=/home/pico/MonetDB-Apr2011/var/log/monetdb/merovingian.log and similar for pidfile
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On 06-05-2011 20:41:47 +0300, Michael Sioutis wrote:
pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd set pidfile=/home/pico/MonetDB-Apr2011/var/log/monetdb/merovingian.log sending SIGHUP to monetdbd[2011] failed: No such process
safe to ignore that :) see monetdbd get all
pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd set logfile=/home/pico/MonetDB-Apr2011/var/log/monetdb/merovingian.log pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd set pidfile=/home/pico/MonetDB-Apr2011/var/log/monetdb/merovingian.log pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd pico@hive:~/MonetDB-Apr2011/bin$ ps -ax | grep monetdbd 2584 ?? Ss 0:00.02 ./monetdbd pico@hive:~/MonetDB-Apr2011/bin$ ./monetdb create mydb created database in maintenance mode: mydb pico@hive:~/MonetDB-Apr2011/bin$ ./monetdb release mydb taken database out of maintenance mode: mydb pico@hive:~/MonetDB-Apr2011/bin$ ./mclient -l sql -u monetdb -d mydb password: merovingian: internal error while starting mserver, please refer to the logs
It's again sth about mal_init, attaching the log.
On Fri, May 6, 2011 at 8:45 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 06-05-2011 20:41:47 +0300, Michael Sioutis wrote:
pico@hive:~/MonetDB-Apr2011/bin$ ./monetdbd set pidfile=/home/pico/MonetDB-Apr2011/var/log/monetdb/merovingian.log sending SIGHUP to monetdbd[2011] failed: No such process
safe to ignore that :) see monetdbd get all
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On 06-05-2011 23:57:45 +0300, Michael Sioutis wrote:
pico@hive:~/MonetDB-Apr2011/bin$ ./mclient -l sql -u monetdb -d mydb password: merovingian: internal error while starting mserver, please refer to the logs
2011-05-06 23:49:08 MSG mydb[1379]: # MonetDB 5 server v11.3.2 2011-05-06 23:49:08 MSG mydb[1379]: # This is an unreleased version 2011-05-06 23:49:08 MSG mydb[1379]: # Serving database 'mydb', using 2 threads 2011-05-06 23:49:08 MSG mydb[1379]: # Compiled for i386-unknown-openbsd4.9/32bit with 32bit OIDs dynamically linked 2011-05-06 23:49:08 MSG mydb[1379]: # Found 0.000 iB available main-memory.
Hmmm, memory detection broke, cpu detection is still in tact.
2011-05-06 23:49:08 MSG mydb[1379]: # Copyright (c) 1993-July 2008 CWI. 2011-05-06 23:49:08 MSG mydb[1379]: # Copyright (c) August 2008-2011 MonetDB B.V., all rights reserved 2011-05-06 23:49:08 MSG mydb[1379]: # Visit http://monetdb.cwi.nl/ for further information 2011-05-06 23:49:08 MSG mydb[1379]: #warning: unable to determine binary location, please use --set monet_mod_path=/path/to/... to allow finding modules 2011-05-06 23:49:08 MSG mydb[1379]: !MALException:malInclude:could not open file: mal_init
Odd enough, mserver uses the same function that monetdbd uses, and for monetdbd it works... Did you perform a full clean recompile? If so, how is your libdir called? e.g. % ls /home/pico/MonetDB-Apr2011/
Full clean recompile. My libdir is: pico@hive:~/MonetDB-Apr2011/lib$ ls libbat.la libmapi.so.3.0 libstream.la pkgconfig libbat.so.3.0 libmonetdb5.la libstream.so.2.0 libmapi.la libmonetdb5.so.7.0 monetdb5
Oddly enough, I can see more files and directories under my lib in Ubuntu (it is version 11.3.1 I think with a different configuration though) : pico@oblivion:~/MonetDB-hg/lib$ ls libbat.la libmapi.so libmonetdb5.so.6 libstream.so.2.0.0 libbat.so libmapi.so.2 libmonetdb5.so.6.0.0 monetdb5 libbat.so.2 libmapi.so.2.0.0 libstream.la pkgconfig libbat.so.2.0.0 libmonetdb5.la libstream.so python2.6 libmapi.la libmonetdb5.so libstream.so.2
On Sat, May 7, 2011 at 10:51 AM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 06-05-2011 23:57:45 +0300, Michael Sioutis wrote:
pico@hive:~/MonetDB-Apr2011/bin$ ./mclient -l sql -u monetdb -d mydb password: merovingian: internal error while starting mserver, please refer to the logs
2011-05-06 23:49:08 MSG mydb[1379]: # MonetDB 5 server v11.3.2 2011-05-06 23:49:08 MSG mydb[1379]: # This is an unreleased version 2011-05-06 23:49:08 MSG mydb[1379]: # Serving database 'mydb', using 2 threads 2011-05-06 23:49:08 MSG mydb[1379]: # Compiled for i386-unknown-openbsd4.9/32bit with 32bit OIDs dynamically linked 2011-05-06 23:49:08 MSG mydb[1379]: # Found 0.000 iB available main-memory.
Hmmm, memory detection broke, cpu detection is still in tact.
2011-05-06 23:49:08 MSG mydb[1379]: # Copyright (c) 1993-July 2008 CWI. 2011-05-06 23:49:08 MSG mydb[1379]: # Copyright (c) August 2008-2011 MonetDB B.V., all rights reserved 2011-05-06 23:49:08 MSG mydb[1379]: # Visit http://monetdb.cwi.nl/ for further information 2011-05-06 23:49:08 MSG mydb[1379]: #warning: unable to determine binary location, please use --set monet_mod_path=/path/to/... to allow finding modules 2011-05-06 23:49:08 MSG mydb[1379]: !MALException:malInclude:could not open file: mal_init
Odd enough, mserver uses the same function that monetdbd uses, and for monetdbd it works... Did you perform a full clean recompile? If so, how is your libdir called? e.g. % ls /home/pico/MonetDB-Apr2011/
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try `ls -l` and you'll see which are files and which are symlinks.
Stefan
On Sat, May 07, 2011 at 01:34:34PM +0300, Michael Sioutis wrote:
Full clean recompile. My libdir is: pico@hive:~/MonetDB-Apr2011/lib$ ls libbat.la libmapi.so.3.0 libstream.la pkgconfig libbat.so.3.0 libmonetdb5.la libstream.so.2.0 libmapi.la libmonetdb5.so.7.0 monetdb5
Oddly enough, I can see more files and directories under my lib in Ubuntu (it is version 11.3.1 I think with a different configuration though) : pico@oblivion:~/MonetDB-hg/lib$ ls libbat.la libmapi.so libmonetdb5.so.6 libstream.so.2.0.0 libbat.so libmapi.so.2 libmonetdb5.so.6.0.0 monetdb5 libbat.so.2 libmapi.so.2.0.0 libstream.la pkgconfig libbat.so.2.0.0 libmonetdb5.la libstream.so python2.6 libmapi.la libmonetdb5.so libstream.so.2
On Sat, May 7, 2011 at 10:51 AM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 06-05-2011 23:57:45 +0300, Michael Sioutis wrote:
pico@hive:~/MonetDB-Apr2011/bin$ ./mclient -l sql -u monetdb -d mydb password: merovingian: internal error while starting mserver, please refer to the logs
2011-05-06 23:49:08 MSG mydb[1379]: # MonetDB 5 server v11.3.2 2011-05-06 23:49:08 MSG mydb[1379]: # This is an unreleased version 2011-05-06 23:49:08 MSG mydb[1379]: # Serving database 'mydb', using 2 threads 2011-05-06 23:49:08 MSG mydb[1379]: # Compiled for i386-unknown-openbsd4.9/32bit with 32bit OIDs dynamically linked 2011-05-06 23:49:08 MSG mydb[1379]: # Found 0.000 iB available main-memory.
Hmmm, memory detection broke, cpu detection is still in tact.
2011-05-06 23:49:08 MSG mydb[1379]: # Copyright (c) 1993-July 2008 CWI. 2011-05-06 23:49:08 MSG mydb[1379]: # Copyright (c) August 2008-2011 MonetDB B.V., all rights reserved 2011-05-06 23:49:08 MSG mydb[1379]: # Visit http://monetdb.cwi.nl/ for further information 2011-05-06 23:49:08 MSG mydb[1379]: #warning: unable to determine binary location, please use --set monet_mod_path=/path/to/... to allow finding modules 2011-05-06 23:49:08 MSG mydb[1379]: !MALException:malInclude:could not open file: mal_init
Odd enough, mserver uses the same function that monetdbd uses, and for monetdbd it works... Did you perform a full clean recompile? If so, how is your libdir called? e.g. % ls /home/pico/MonetDB-Apr2011/
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Ok, i have symlinks in my UBuntu, but none in my OpenBSD.
On Sat, May 7, 2011 at 1:52 PM, Stefan Manegold Stefan.Manegold@cwi.nl wrote:
try `ls -l` and you'll see which are files and which are symlinks.
Stefan
On Sat, May 07, 2011 at 01:34:34PM +0300, Michael Sioutis wrote:
Full clean recompile. My libdir is: pico@hive:~/MonetDB-Apr2011/lib$ ls libbat.la libmapi.so.3.0 libstream.la pkgconfig libbat.so.3.0 libmonetdb5.la libstream.so.2.0 libmapi.la libmonetdb5.so.7.0 monetdb5
Oddly enough, I can see more files and directories under my lib in Ubuntu (it is version 11.3.1 I think with a different configuration though) : pico@oblivion:~/MonetDB-hg/lib$ ls libbat.la libmapi.so libmonetdb5.so.6 libstream.so.2.0.0 libbat.so libmapi.so.2 libmonetdb5.so.6.0.0 monetdb5 libbat.so.2 libmapi.so.2.0.0 libstream.la pkgconfig libbat.so.2.0.0 libmonetdb5.la libstream.so python2.6 libmapi.la libmonetdb5.so libstream.so.2
On Sat, May 7, 2011 at 10:51 AM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 06-05-2011 23:57:45 +0300, Michael Sioutis wrote:
pico@hive:~/MonetDB-Apr2011/bin$ ./mclient -l sql -u monetdb -d mydb password: merovingian: internal error while starting mserver, please refer to the logs
2011-05-06 23:49:08 MSG mydb[1379]: # MonetDB 5 server v11.3.2 2011-05-06 23:49:08 MSG mydb[1379]: # This is an unreleased version 2011-05-06 23:49:08 MSG mydb[1379]: # Serving database 'mydb', using 2 threads 2011-05-06 23:49:08 MSG mydb[1379]: # Compiled for i386-unknown-openbsd4.9/32bit with 32bit OIDs dynamically linked 2011-05-06 23:49:08 MSG mydb[1379]: # Found 0.000 iB available main-memory.
Hmmm, memory detection broke, cpu detection is still in tact.
2011-05-06 23:49:08 MSG mydb[1379]: # Copyright (c) 1993-July 2008 CWI. 2011-05-06 23:49:08 MSG mydb[1379]: # Copyright (c) August 2008-2011 MonetDB B.V., all rights reserved 2011-05-06 23:49:08 MSG mydb[1379]: # Visit http://monetdb.cwi.nl/ for further information 2011-05-06 23:49:08 MSG mydb[1379]: #warning: unable to determine binary location, please use --set monet_mod_path=/path/to/... to allow finding modules 2011-05-06 23:49:08 MSG mydb[1379]: !MALException:malInclude:could not open file: mal_init
Odd enough, mserver uses the same function that monetdbd uses, and for monetdbd it works... Did you perform a full clean recompile? If so, how is your libdir called? e.g. % ls /home/pico/MonetDB-Apr2011/
WhatsUp Gold - Download Free Network Management Software The most intuitive, comprehensive, and cost-effective network management toolset available today. Delivers lowest initial acquisition cost and overall TCO of any competing solution. http://p.sf.net/sfu/whatsupgold-sd _______________________________________________ MonetDB-users mailing list MonetDB-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/monetdb-users
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On 07-05-2011 14:07:01 +0300, Michael Sioutis wrote:
Ok, i have symlinks in my UBuntu, but none in my OpenBSD.
It's about the same files, you just don't have python stuff. (BSD uses another versioning scheme than Linux and Solaris for its ELF shared objects)
On Sat, May 07, 2011 at 01:34:34PM +0300, Michael Sioutis wrote:
Full clean recompile. My libdir is: pico@hive:~/MonetDB-Apr2011/lib$ ls libbat.la libmapi.so.3.0 libstream.la pkgconfig libbat.so.3.0 libmonetdb5.la libstream.so.2.0 libmapi.la libmonetdb5.so.7.0 monetdb5
Oddly enough, I can see more files and directories under my lib in Ubuntu (it is version 11.3.1 I think with a different configuration though) : pico@oblivion:~/MonetDB-hg/lib$ ls libbat.la libmapi.so libmonetdb5.so.6 libstream.so.2.0.0 libbat.so libmapi.so.2 libmonetdb5.so.6.0.0 monetdb5 libbat.so.2 libmapi.so.2.0.0 libstream.la pkgconfig libbat.so.2.0.0 libmonetdb5.la libstream.so python2.6 libmapi.la libmonetdb5.so libstream.so.2
Hello,
After a period of inactivity because of a system (human) failure I installed from scratch the 11.3.4 MonetDB version on my OpenBSD 32bit 4.9 system, and the errors remain. I am attaching the merovingian.log.
What other sort of information should I provide? I can access a lot of specific information about the kernel state with the aid of sysctl utility (if you find that by any chance relevant) and I could look into relevant source code files, to see what the sysctl calls are (only assuming that this is the problem, because of the changes that have been made for OpenBSD).
Mike
On Sat, May 7, 2011 at 9:34 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 07-05-2011 14:07:01 +0300, Michael Sioutis wrote:
Ok, i have symlinks in my UBuntu, but none in my OpenBSD.
It's about the same files, you just don't have python stuff. (BSD uses another versioning scheme than Linux and Solaris for its ELF shared objects)
On Sat, May 07, 2011 at 01:34:34PM +0300, Michael Sioutis wrote:
Full clean recompile. My libdir is: pico@hive:~/MonetDB-Apr2011/lib$ ls libbat.la libmapi.so.3.0 libstream.la pkgconfig libbat.so.3.0 libmonetdb5.la libstream.so.2.0 libmapi.la libmonetdb5.so.7.0 monetdb5
Oddly enough, I can see more files and directories under my lib in Ubuntu (it is version 11.3.1 I think with a different configuration though) : pico@oblivion:~/MonetDB-hg/lib$ ls libbat.la libmapi.so libmonetdb5.so.6 libstream.so.2.0.0 libbat.so libmapi.so.2 libmonetdb5.so.6.0.0 monetdb5 libbat.so.2 libmapi.so.2.0.0 libstream.la pkgconfig libbat.so.2.0.0 libmonetdb5.la libstream.so python2.6 libmapi.la libmonetdb5.so libstream.so.2
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Michael,
in case you have a debug build (default with HG source, unless you configure explicitly with --disable-debug), coudl you please start mserver5 by hand in a debugger, e.g.,
gdb mserver5
break on function get_bin_path(), run, once it breaks in function get_bin_path() single-step through it, and report on which return it exits from function get_bin_path() ?
Stefan
On Thu, May 19, 2011 at 02:20:02PM +0300, Michael Sioutis wrote:
Hello,
After a period of inactivity because of a system (human) failure I installed from scratch the 11.3.4 MonetDB version on my OpenBSD 32bit 4.9 system, and the errors remain. I am attaching the merovingian.log.
What other sort of information should I provide? I can access a lot of specific information about the kernel state with the aid of sysctl utility (if you find that by any chance relevant) and I could look into relevant source code files, to see what the sysctl calls are (only assuming that this is the problem, because of the changes that have been made for OpenBSD).
Mike
On Sat, May 7, 2011 at 9:34 PM, Fabian Groffen Fabian.Groffen@cwi.nl wrote:
On 07-05-2011 14:07:01 +0300, Michael Sioutis wrote:
Ok, i have symlinks in my UBuntu, but none in my OpenBSD.
It's about the same files, you just don't have python stuff. (BSD uses another versioning scheme than Linux and Solaris for its ELF shared objects)
On Sat, May 07, 2011 at 01:34:34PM +0300, Michael Sioutis wrote:
Full clean recompile. My libdir is: pico@hive:~/MonetDB-Apr2011/lib$ ls libbat.la libmapi.so.3.0 libstream.la pkgconfig libbat.so.3.0 libmonetdb5.la libstream.so.2.0 libmapi.la libmonetdb5.so.7.0 monetdb5
Oddly enough, I can see more files and directories under my lib in Ubuntu (it is version 11.3.1 I think with a different configuration though) : pico@oblivion:~/MonetDB-hg/lib$ ls libbat.la libmapi.so libmonetdb5.so.6 libstream.so.2.0.0 libbat.so libmapi.so.2 libmonetdb5.so.6.0.0 monetdb5 libbat.so.2 libmapi.so.2.0.0 libstream.la pkgconfig libbat.so.2.0.0 libmonetdb5.la libstream.so python2.6 libmapi.la libmonetdb5.so libstream.so.2
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participants (5)
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Fabian Groffen -
Michael Sioutis -
Sjoerd Mullender -
Stefan Manegold -
Stefan.Manegold＠cwi.nl