if i run these commands in R, mserver dies.. any ideas how to fix? thanks
# MonetDB 5 server v11.21.3 "Jul2015" # Serving database 'marketscan', using 4 threads # Compiled for x86_64-pc-winnt/64bit with 64bit OIDs dynamically linked # Found 64.000 GiB available main-memory. # Copyright (c) 1993-July 2008 CWI. # Copyright (c) August 2008-2015 MonetDB B.V., all rights reserved # Visit http://www.monetdb.org/ for further information # Listening for connection requests on mapi:monetdb://127.0.0.1:49700/ # Start processing logs sql/sql_logs version 52200 # Start reading the write-ahead log 'sql_logs\sql\log.211' # Finished reading the write-ahead log 'sql_logs\sql\log.211' !ERROR: log_sequence_: write failed # Finished processing logs sql/sql_logs # MonetDB/SQL module loaded
=========================
pid <- monetdb.server.start( batfile ) dbname <- "marketscan" dbport <- 49700 monet.url <- paste0( "monetdb://localhost:" , dbport , "/" , dbname ) db <- dbConnect( MonetDB.R() , monet.url , wait = TRUE )
Server not ready(cannot open the connection), retrying (ESC or CTRL+C to abort)
dbListTables(db)
Error in .local(conn, statement, ...) : Unable to execute statement 'select schemas.name as sn, tables.name as tn from sys.tables join sys.schemas on tables.schema_id=sc...'. Server says 'ERROR: BBPdir_subcommit: Syncing BBP.dir file failed' [#GDKerror:].
dbListTables(db)
Error in .local(conn, statement, ...) : Unable to execute statement 'select schemas.name as sn, tables.name as tn from sys.tables join sys.schemas on tables.schema_id=sc...'. Server says 'ERROR: GDKsave: error on: name=06\651, ext=timprints, mode=0' [#GDKerror:].
dbListTables(db)
[1] "ccaea" "ccaed" "ccaef" "ccaei" "ccaeo" [6] "ccaep" "ccaes" "ccaet" "redbook" "state" [11] "wgt" "ccaea_st_wt" "ccaet_st_wt" "ccaes_monthly" "ccaes_annual" [16] "ccaeo_monthly" "ccaeo_annual" "ccaed_monthly" "ccaed_annual" "ccaes_admmon_xwalk" [21] "ccaes_monthly_wxw" "ccaed_svcmon_xwalk" "ccaed_monthly_wxw" "ccaeo_svcmon_xwalk" "ccaeo_monthly_wxw" [26] "acons_pre" "mcons_pre" "ccs" "acons_diag" "mcons_diag" [31] "readm" "acons_readm" "mcons_readm" "mcons" "acons"
# create a temporary person-year table dbSendQuery(
+ db , + 'CREATE TABLE temp AS + SELECT + datatyp , + yr , + enrolid , + SUM( wgt ) AS sum_wgt , + SUM( CAST( ( rx_pay ) > 250 AS INTEGER ) ) AS rx_pay_above_250 , + SUM( CAST( ( rx_copay + rx_coins + rx_deduct ) > 250 AS INTEGER ) ) AS rx_copay_coins_deduct_above_250 + FROM + mcons + WHERE + datatyp = 1 + GROUP BY + datatyp , yr , enrolid + ORDER BY + datatyp , yr , enrolid + WITH DATA' + ) Error in readBin(con, "integer", n = 1, size = 2, signed = FALSE, endian = "little") : error reading from the connection
# # # # mserver is dead
DB looks corrupted. I would recreate it and see whether that fixes the issue.
On 21 Sep 2015, at 18:01, Anthony Damico ajdamico@gmail.com wrote:
# MonetDB 5 server v11.21.3 "Jul2015" # Serving database 'marketscan', using 4 threads # Compiled for x86_64-pc-winnt/64bit with 64bit OIDs dynamically linked # Found 64.000 GiB available main-memory. # Copyright (c) 1993-July 2008 CWI. # Copyright (c) August 2008-2015 MonetDB B.V., all rights reserved # Visit http://www.monetdb.org/ for further information # Listening for connection requests on mapi:monetdb://127.0.0.1:49700/ # Start processing logs sql/sql_logs version 52200 # Start reading the write-ahead log 'sql_logs\sql\log.211' # Finished reading the write-ahead log 'sql_logs\sql\log.211' !ERROR: log_sequence_: write failed # Finished processing logs sql/sql_logs # MonetDB/SQL module loaded
=========================
pid <- monetdb.server.start( batfile ) dbname <- "marketscan" dbport <- 49700 monet.url <- paste0( "monetdb://localhost:" , dbport , "/" , dbname ) db <- dbConnect( MonetDB.R() , monet.url , wait = TRUE )
Server not ready(cannot open the connection), retrying (ESC or CTRL+C to abort)
dbListTables(db)
Error in .local(conn, statement, ...) : Unable to execute statement 'select schemas.name as sn, tables.name as tn from sys.tables join sys.schemas on tables.schema_id=sc...'. Server says 'ERROR: BBPdir_subcommit: Syncing BBP.dir file failed' [#GDKerror:].
dbListTables(db)
Error in .local(conn, statement, ...) : Unable to execute statement 'select schemas.name as sn, tables.name as tn from sys.tables join sys.schemas on tables.schema_id=sc...'. Server says 'ERROR: GDKsave: error on: name=06\651, ext=timprints, mode=0' [#GDKerror:].
dbListTables(db)
[1] "ccaea" "ccaed" "ccaef" "ccaei" "ccaeo" [6] "ccaep" "ccaes" "ccaet" "redbook" "state" [11] "wgt" "ccaea_st_wt" "ccaet_st_wt" "ccaes_monthly" "ccaes_annual" [16] "ccaeo_monthly" "ccaeo_annual" "ccaed_monthly" "ccaed_annual" "ccaes_admmon_xwalk" [21] "ccaes_monthly_wxw" "ccaed_svcmon_xwalk" "ccaed_monthly_wxw" "ccaeo_svcmon_xwalk" "ccaeo_monthly_wxw" [26] "acons_pre" "mcons_pre" "ccs" "acons_diag" "mcons_diag" [31] "readm" "acons_readm" "mcons_readm" "mcons" "acons"
# create a temporary person-year table dbSendQuery(
- db ,
- 'CREATE TABLE temp AS
- SELECT
- datatyp ,
- yr ,
- enrolid ,
- SUM( wgt ) AS sum_wgt ,
- SUM( CAST( ( rx_pay ) > 250 AS INTEGER ) ) AS rx_pay_above_250 ,
- SUM( CAST( ( rx_copay + rx_coins + rx_deduct ) > 250 AS INTEGER ) ) AS rx_copay_coins_deduct_above_250
- FROM
- mcons
- WHERE
- datatyp = 1
- GROUP BY
- datatyp , yr , enrolid
- ORDER BY
- datatyp , yr , enrolid
- WITH DATA'
- )
Error in readBin(con, "integer", n = 1, size = 2, signed = FALSE, endian = "little") : error reading from the connection
# # # # mserver is dead _______________________________________________ users-list mailing list users-list@monetdb.org https://www.monetdb.org/mailman/listinfo/users-list
when i try to re-create the db from scratch, i immediately hit this error. any idea what is going on? my disk is definitely not full
!ERROR: BBPdir: Syncing BBP.dir file failed !OS: The storage control block address is invalid. !FATAL: BBPinit: could not write bat\BBP.dir. Please check whether your disk is full or write-protected Press any key to continue . . .
On Tue, Sep 22, 2015 at 7:02 AM, Hannes Mühleisen hannes.muehleisen@cwi.nl wrote:
DB looks corrupted. I would recreate it and see whether that fixes the issue.
On 21 Sep 2015, at 18:01, Anthony Damico ajdamico@gmail.com wrote:
# MonetDB 5 server v11.21.3 "Jul2015" # Serving database 'marketscan', using 4 threads # Compiled for x86_64-pc-winnt/64bit with 64bit OIDs dynamically linked # Found 64.000 GiB available main-memory. # Copyright (c) 1993-July 2008 CWI. # Copyright (c) August 2008-2015 MonetDB B.V., all rights reserved # Visit http://www.monetdb.org/ for further information # Listening for connection requests on mapi:monetdb://127.0.0.1:49700/ # Start processing logs sql/sql_logs version 52200 # Start reading the write-ahead log 'sql_logs\sql\log.211' # Finished reading the write-ahead log 'sql_logs\sql\log.211' !ERROR: log_sequence_: write failed # Finished processing logs sql/sql_logs # MonetDB/SQL module loaded
=========================
pid <- monetdb.server.start( batfile ) dbname <- "marketscan" dbport <- 49700 monet.url <- paste0( "monetdb://localhost:" , dbport , "/" , dbname ) db <- dbConnect( MonetDB.R() , monet.url , wait = TRUE )
Server not ready(cannot open the connection), retrying (ESC or CTRL+C to
abort)
dbListTables(db)
Error in .local(conn, statement, ...) : Unable to execute statement 'select schemas.name as sn, tables.name
as tn from sys.tables join sys.schemas on tables.schema_id=sc...'.
Server says 'ERROR: BBPdir_subcommit: Syncing BBP.dir file failed'
[#GDKerror:].
dbListTables(db)
Error in .local(conn, statement, ...) : Unable to execute statement 'select schemas.name as sn, tables.name
as tn from sys.tables join sys.schemas on tables.schema_id=sc...'.
Server says 'ERROR: GDKsave: error on: name=06\651, ext=timprints,
mode=0' [#GDKerror:].
dbListTables(db)
[1] "ccaea" "ccaed" "ccaef"
"ccaei" "ccaeo"
[6] "ccaep" "ccaes" "ccaet"
"redbook" "state"
[11] "wgt" "ccaea_st_wt" "ccaet_st_wt"
"ccaes_monthly" "ccaes_annual"
[16] "ccaeo_monthly" "ccaeo_annual" "ccaed_monthly"
"ccaed_annual" "ccaes_admmon_xwalk"
[21] "ccaes_monthly_wxw" "ccaed_svcmon_xwalk" "ccaed_monthly_wxw"
"ccaeo_svcmon_xwalk" "ccaeo_monthly_wxw"
[26] "acons_pre" "mcons_pre" "ccs"
"acons_diag" "mcons_diag"
[31] "readm" "acons_readm" "mcons_readm"
"mcons" "acons"
# create a temporary person-year table dbSendQuery(
- db ,
- 'CREATE TABLE temp AS
- SELECT
- datatyp ,
- yr ,
- enrolid ,
- SUM( wgt ) AS sum_wgt ,
- SUM( CAST( ( rx_pay ) > 250 AS INTEGER ) ) AS rx_pay_above_250 ,
- SUM( CAST( ( rx_copay + rx_coins + rx_deduct ) > 250 AS INTEGER ) ) AS
rx_copay_coins_deduct_above_250
- FROM
- mcons
- WHERE
- datatyp = 1
- GROUP BY
- datatyp , yr , enrolid
- ORDER BY
- datatyp , yr , enrolid
- WITH DATA'
- )
Error in readBin(con, "integer", n = 1, size = 2, signed = FALSE, endian
= "little") :
error reading from the connection
# # # # mserver is dead _______________________________________________ users-list mailing list users-list@monetdb.org https://www.monetdb.org/mailman/listinfo/users-list
users-list mailing list users-list@monetdb.org https://www.monetdb.org/mailman/listinfo/users-list
participants (2)
-
Anthony Damico -
Hannes Mühleisen