April 2021 - users-list

[MonetDB-users] Proofreading your professional documents
by Richard Hounslow 24 Feb '24

24 Feb '24

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SELinux problems
by Arjen P. de Vries 29 Dec '21

29 Dec '21

Hi all, Not really a bug report because I did not manage to figure out the cause. However, after upgrading from FC31 to FC32 I could not login any more, due to SELinux problems. Auto-relabeling did not work, nothing really... ... until I did dnf uninstall MonetDB-selinux. I came to this point because trying to give systemd services the correct labels with restorecon failed with an error referencing a monetdb specific file. I do not have the details unfortunately, but if you get problems, beware that MonetDB SELinux package and systemd may interfere in some way beyond my knowledge of these services. Best regards, Arjen PS: Some output from logs: sudo ausearch -c monetdb -m AVC,SELINUX_ERR [..] ---- time->Sat May 2 20:57:01 2020 type=AVC msg=audit(1588445821.693:203): avc: denied { open } for pid=1232 comm="monetdbd" path="/etc/resolv.conf" dev="dm-0" ino=3409775 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:default_t:s0 tclass=file permissive=1 ---- time->Sat May 2 21:12:56 2020 type=AVC msg=audit(1588446776.043:1194): avc: denied { execute } for pid=2861 comm="(monetdbd)" name="monetdbd" dev="dm-0" ino=2147256 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:unlabeled_t:s0 tclass=file permissive=1 trawcon="unconfined_u:object_r:monetdbd_exec_t:s0" ---- time->Sat May 2 21:12:56 2020 type=AVC msg=audit(1588446776.043:1195): avc: denied { execute_no_trans } for pid=2861 comm="(monetdbd)" path="/usr/bin/monetdbd" dev="dm-0" ino=2147256 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:unlabeled_t:s0 tclass=file permissive=1 trawcon="unconfined_u:object_r:monetdbd_exec_t:s0" ---- time->Sat May 2 21:12:56 2020 type=AVC msg=audit(1588446776.044:1196): avc: denied { map } for pid=2861 comm="monetdbd" path="/usr/bin/monetdbd" dev="dm-0" ino=2147256 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:unlabeled_t:s0 tclass=file permissive=1 trawcon="unconfined_u:object_r:monetdbd_exec_t:s0" ---- time->Sat May 2 21:12:56 2020 type=AVC msg=audit(1588446776.714:1197): avc: denied { remove_name } for pid=1232 comm="monetdbd" name="merovingian.pid" dev="tmpfs" ino=34369 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:unlabeled_t:s0 tclass=dir permissive=1 trawcon="system_u:object_r:monetdbd_var_run_t:s0" ---- time->Sat May 2 21:12:56 2020 type=AVC msg=audit(1588446776.714:1198): avc: denied { unlink } for pid=1232 comm="monetdbd" name="merovingian.pid" dev="tmpfs" ino=34369 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:unlabeled_t:s0 tclass=file permissive=1 ---- time->Sat May 2 21:12:56 2020 type=AVC msg=audit(1588446776.714:1199): avc: denied { write } for pid=1232 comm="monetdbd" name=".merovingian_lock" dev="dm-0" ino=5899443 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:unlabeled_t:s0 tclass=file permissive=1 trawcon="system_u:object_r:monetdbd_lock_t:s0" ---- time->Sat May 2 21:13:15 2020 type=AVC msg=audit(1588446795.214:1209): avc: denied { read } for pid=2925 comm="(monetdbd)" name="passwd" dev="dm-0" ino=524514 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:var_t:s0 tclass=file permissive=1 ---- time->Sat May 2 21:13:15 2020 type=AVC msg=audit(1588446795.214:1210): avc: denied { open } for pid=2925 comm="(monetdbd)" path="/var/lib/sss/mc/passwd" dev="dm-0" ino=524514 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:var_t:s0 tclass=file permissive=1 ---- time->Sat May 2 21:13:15 2020 type=AVC msg=audit(1588446795.214:1211): avc: denied { map } for pid=2925 comm="(monetdbd)" path="/var/lib/sss/mc/passwd" dev="dm-0" ino=524514 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:var_t:s0 tclass=file permissive=1 ---- time->Sat May 2 21:14:24 2020 type=AVC msg=audit(1588446864.487:1281): avc: denied { read } for pid=3072 comm="(monetdbd)" name="passwd" dev="dm-0" ino=524514 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:var_t:s0 tclass=file permissive=1 ---- time->Sat May 2 21:14:24 2020 type=AVC msg=audit(1588446864.487:1282): avc: denied { open } for pid=3072 comm="(monetdbd)" path="/var/lib/sss/mc/passwd" dev="dm-0" ino=524514 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:var_t:s0 tclass=file permissive=1 ---- time->Sat May 2 21:14:24 2020 type=AVC msg=audit(1588446864.487:1283): avc: denied { map } for pid=3072 comm="(monetdbd)" path="/var/lib/sss/mc/passwd" dev="dm-0" ino=524514 scontext=system_u:system_r:init_t:s0 tcontext=system_u:object_r:var_t:s0 tclass=file permissive=1 -- ==================================================================== ICIS, office M1.00.05 Radboud University Mercator 1 Faculty of Science Toernooiveld 212 arjen(a)cs.ru.nl NL-6525 EC Nijmegen, The Netherlands +31-(0)24-365 2354 ===================== http://www.informagus.nl/ ==================== -- ==================================================================== ICIS, office M1.00.05 Radboud University Mercator 1 Faculty of Science Toernooiveld 212 arjen(a)cs.ru.nl NL-6525 EC Nijmegen, The Netherlands +31-(0)24-365 2354 ===================== http://www.informagus.nl/ ====================

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Linux kernel vm settings
by Roberto Cornacchia 06 Jun '21

06 Jun '21

Hi there, I looked around but couldn't find any recommendation about kernel vm settings in Linux for MonetDB. In particular: - vm.overcommit_memory: 0 (default) : a heuristics decides whether overcommitting is allowed 1: no check, overcommit is always allowed 2: overcommitting is regulated by vm.overcommit_ratio (default = 50%) Do I understand correctly that using vm.overcommit_memory=1 will only make the OOM kill mserver5 when the total VM available is exhausted? If that is true, should it be reasonably safe to use on a server that is mainly intended for MonetDB, as long as sufficient disk space is available? - vm.swappiness Generic recommendations are usually 60 for a desktop and 30 for a server. Oracle recommends 10. Redis recommends 1. Are there studies / recommendations for MonetDB?

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Announcement: New Oct2020-SP4 Bugfix release of MonetDB suite
by Sjoerd Mullender 12 Apr '21

12 Apr '21

The MonetDB team at MonetDB BV is pleased to announce the Oct2020-SP4 bugfix release of the MonetDB suite of programs. More information about MonetDB can be found on our website at <https://www.monetdb.org/>. For details on this release, please see the release notes at <https://www.monetdb.org/Downloads/ReleaseNotes>. As usual, the download location is <https://www.monetdb.org/downloads/>. Oct2020-SP4 Bugfix Release (11.39.15) ODBC Driver * When connecting using a DSN (Data Source Name), information about the data source is retrieved from the ODBC.INI file. Now we also get the location of the LOGFILE from this file. The logfile can be used to log all calls to the MonetDB ODBC driver to a file which can be used for debugging. * The ODBC driver now only passes on information about HUGEINT columns as HUGEINT when the application has indicated interest by querying about the SQL_HUGEINT extension type using the SQLGetTypeInfo function or by specifying the type in a call to SQLSetDescField. Otherwise the driver silently translates the HUGEINT type to BIGINT. This means that most application will see BIGINT columns when the server produced a HUGEINT column and only give an error if the value in the HUGEINT column didn't fit into a BIGINT. Bug Fixes * 6786: function json.isvalid(js json) is not useful, could be removed * 7016: Database crashes when use similarity function on a table with more than 200k records * 7037: Clearer err msg for ALTER USER with insufficient privileges * 7042: AddressSanitizer:DEADLYSIGNAL in Oct2020/gdk/gdk_tracer.c:494 * 7050: file descriptor leak when forward=redirect * 7057: ODBC driver installer on Windows is missing some DLLs * 7058: MonetDBe: COPY INTO csv file does not produce any output * 7059: MonetDBe: 'reverse' C UDF crashes * 7061: Have bulk load support combined gzip files * 7064: Temporary hashes created in hash and unique logic should try to use transient data farm first * 7066: percent_rank function with wrong results * 7070: double free error when running MonetDBe Example * 7076: mserver5 ignores memory.low from cgroups v2 * 7077: Oct2020: new default privileges not effectively communicated * 7083: MonetDBe C++ Compiling Error * 7085: Mitosis and filter functions * 7087: SIGSEGV caused by error in subquery's function being ignored by top-level query * 7089: Data consistency problem of query results in the latest release of Monetdb (Remote Table)

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Need info about --in-memory option
by Lakshmipathy Jois 09 Apr '21

09 Apr '21

Hi All, I am new to MonetDB and this is my first email to this group. I came across the option --in-memory for mserver5. I understood that if this option is set, then MonetDB operates out of memory and data is not persisted. I wanted to know more details about the working of MonetDB if this option is set: 1. If this option is set, what is the maximum data size that MonetDB can operate with? 2. If this option is set, will MonetDB use mmap only for reading purposes or not use mmap at all? Any other information is really welcome. Thanks in advance. Lakshmi Pathy S N

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